Ocean Sciences

1. The Oceans. F,W,S
An interdisciplinary introduction to oceanography focusing on biological, chemical, geological, and physical processes. Covers topics such as origins and structure of planet Earth and its oceans, co-evolution of Earth and life, plate tectonics, liquid water and the hydrologic and hydrothermal cycles, salinity and elemental cycles, ocean circulation, primary production and nutrient cycles, plankton and nekton, life on the sea floor, near shore and estuarine communities, future environmental problems our oceans face. Students may also enroll in and receive credit for Earth Sciences 1. (Note: General Education credit will not be granted for this course and Biology 80D.). (General Education Code(s): IN, Q.) M. Delaney, M. McCarthy

80A. Life in the Sea. F,W,S
The ecology of plants and animals in oceans and coastal areas. Consideration of life in various marine habitats, including the open ocean, rocky shores, estuaries, and the sea. Includes field trips. High school biology and chemistry courses are recommended prior to taking this course. (General Education Code(s): T2-Natural Sciences.) J. Zehr

80B. Our Changing Planet. W
Interdisciplinary scientific perspective on Earth system, focusing on human impacts on global environment. Introduces concepts of Earth system science and explores topics such as global warming, ozone depletion, pollution, deforestation, and future climate change. Prerequisite(s): high school chemistry course recommended. (General Education Code(s): T2-Natural Sciences.) A. Ravelo

80C. Introduction to Marine Policy. S
Introduction to marine policy, its historical, legal, and socio-political foundations, processes, and role of science therein, using comparative case studies (e.g., fishery management, offshore oil and gas) and including recent changes in California’s marine policy. (General Education Code(s): T2-Natural Sciences.) C. Pomeroy

Upper-Division Courses

101. The Marine Environment. W
An introduction to the marine environment stressing the interaction of physical, chemical, and geological factors in the ocean. Provides the oceanographic background needed for studies in marine biology. Students taking the prerequisite math courses concurrently may enroll in the course with permission from instructor. Prerequisite(s): Chemistry 1C and Mathematics 11B or 19B. Students taking the prerequisite math courses concurrently may enroll in the course with permission from instructor. R. Kudela

102. Oceans and Climate: Past, Present, and Future. *
An introduction to Earth’s environment, particularly its oceanic and climatic components. Emphasizes interactions between chemical, physical, biological, and geological processes, and fundamentals of past, present, and future global environmental change. Provides backgrounds for specialized courses in oceanic or climatic change. Prerequisite(s): Chemistry 1C. A. Ravelo

118. Marine Microbial Ecology. S
The study of marine bacteria and their role in the marine ecosystem. Emphasis on biochemistry and physiology in relation to metabolic activity and elemental cycles, trophic interactions, and flows of material and energy in marine food webs. Exams and term paper required. Students cannot receive credit for this course and course 218. (Also offered as Biology 171. Students cannot receive credit for both courses.) Prerequisite(s): Biology 20C or 21C, and Chemistry 1C. J. Zehr

120. Aquatic Chemistry: Principles and Applications. S
An integrated study of the chemical behavior of natural waters with an emphasis on both principles and applications. Topics include chemical equilibrium, kinetics, acids/bases, oxidation/reduction, complexation, solid dissolution and precipitation, and reactions on solid surfaces. Prerequisite(s): Chemistry 108B or 112C. K. Bruland

124. Aquatic Organic Geochemistry. W
Introduction to organic geochemistry with emphasis on aquatic environments. Explores how non-living organic matter shapes biogeochemical cycles by carrying and sequestering reduced carbon and major nutrients and examines influence of chemical structure and environmental factors on transport and fate of organic molecules. Provides an introduction to organic biomarkers. Students cannot receive credit for this course and course 224. Prerequisite(s): basic college chemistry (Chemistry 1B, 1C); at least one quarter of college level organic chemistry required (e.g., Chemistry 7). M. McCarthy

130. Biological Oceanography. S
Biological description of sea, with emphasis on processes and patterns. Topics include microbial dynamics, phytoplankton and zooplankton production, and ecology of marine food webs. Emphasis placed on understanding how physical, chemical, and geological environment shapes biology and ecology of oceans, including such topics as harmful algal blooms, global estimates of productivity, and effects of humans on environment. (Formerly Ocean Processes and Ecology. )Students may not receive credit for this course and course 230. Prerequisite(s): previous course in ocean sciences recommended. Enrollment restricted to juniors (with instructor approval), seniors, graduate students. R. Kudela

142. Ocean Ecosystems. W
Discussion of selected topics in animal ecology of the open sea: zooplankton production, variability of pelagic populations, food webs, deep-sea pelagic and benthic ecology, fisheries oceanography, and human effects on the open ocean biota. Students cannot receive credit for this course and course 242. (Also offered as Biology 142. Students cannot receive credit for both courses.) Prerequisite(s): Biology 20A-B-C and 20L or an equivalent introductory biology sequence with lab; one ocean sciences course recommended. M. Silver

156. Marine Plankton. *
Review of morphology, systematics, and natural history of major marine planktonic taxa and evaluation of local plankton forms. Two lecture/lab sessions of three and one-half hours each, and two field trips during the quarter. Recommended for upper-division and graduate students. Prerequisite(s): one of the following recommended as preparation: course 118, 142, or 242; or Biology 136, 146, or 170. Recommended for upper-division and graduate students. M. Silver

156L. Marine Plankton Laboratory (2 credits). *
Two lab meetings weekly. Concerned primarily with evaluation of local plankton forms. Must be taken concurrently with course 156. Prerequisite(s): one of the following recommended as preparation: course 118, 140,or 240 or Biology 136,146, or 170. Must be taken concurrently with course 156. M. Silver

157. Ecology of Reefs, Mangroves, and Seagrasses. S
Integrated treatment of coral reefs, sea grasses, and mangroves emphasizing interactions and processes through time. Major topics: biological and geological history, biogeography, evolution and ecology of dominant organisms, biodiversity, community and ecosystem ecology, geology, biogeochemistry, global change, human impacts. (Also offered as Biology 158. Students cannot receive credit for both courses.) Prerequisite(s): Biology 20A-B-C and one relevant upper-division course in biology, Earth sciences, or ocean sciences, such as Biology 150 or 175; Earth Sciences 101, 102, or 105; or course 101. The Staff

199. Independent Study. F,W,S
Students submit petition to sponsoring agency. The Staff

Graduate Courses

200. Physical Oceanography. F
Introduction to the physics of the ocean-atmosphere system. Structure of the ocean and atmosphere. Energy balance and radiative transfer. Atmospheric circulation; weather and climate. Physical properties of seawater, air-sea interaction, mixing, water masses, ocean circulation, waves; CO2 and global change. Designed for beginning graduate students in ocean sciences and upper-division science majors. Calculus and physics recommended as preparation. C. Edwards

218. Marine Microbial Ecology. S
Recent developments in the study of marine bacteria and their role in the marine ecosystem. Emphasis on biochemistry and physiology in relation to metabolic activity and elemental cycles, trophic interactions and flows of material and energy in marine food webs. Exams and research paper required. Students cannot receive credit for this course, course 118, and Biology 171. Biology 20C and Chemistry 1C recommended. J. Zehr

220. Chemical Oceanography. W
A chemical description of the sea; emphasis on the chemical interactions of the oceans with the biosphere, atmosphere, and lithosphere. Topics include biogeochemical cycles and the use of chemical tracers to study oceanic and coastal processes. Course designed for graduate students; available to upper-division science majors. K. Bruland

224. Aquatic Organic Geochemistry. W
Introduction to organic geochemistry with emphasis on aquatic environments. Explores how non-living organic matter shapes biogeochemical cycles by carrying and sequestering reduced carbon and major nutrients and examines influence of chemical structure and environmental factors on transport and fate of organic molecules. Provides an introduction to organic biomarkers. Students cannot receive credit for this course and course 124. Prerequisite(s): permission of instructor. Enrollment restricted to graduate students. M. McCarthy

230. Biological Oceanography. S
Biological description of sea, with emphasis on processes and patterns. Topics include microbial dynamics, phytoplankton and zooplankton production, and ecology of marine food webs. Emphasis placed on understanding how physical, chemical, and geological environment shapes biology and ecology of oceans, including such topics as harmful algal blooms, global estimates of productivity, and effects of humans on environment. (Formerly Ocean Processes and Ecology. )Students may not receive credit for this course and course 130. Prerequisite(s): previous course in ocean sciences recommended. Enrollment restricted to graduate students. R. Kudela

242. Ocean Ecosystems. W
Discussion of selected topics in animal ecology of the open sea: zooplankton production, variability of pelagic populations, food webs, deep sea pelagic and benthic ecology, fisheries oceanography, and human effects on the open ocean biota. Students cannot receive credit for this course and course 142. (Also offered as Biology 242. Students cannot receive credit for both courses.) Prerequisite(s): Biology 20A-B-C and 20L or an equivalent introductory biology sequence with lab; one ocean sciences course recommended. Enrollment restricted to graduate students. M. Silver

280. Marine Geology. F
Geology of the marine environment. Topics include controls on the types, origin, and distribution of marine sediments; geology of oceanic crust; evolution of continental margins and plate boundaries; introduction to paleoceanography. Students cannot receive credit for this course and Earth Sciences 102. Enrollment restricted to graduate students. M. Delaney

290. Proseminar.
Special topics in marine sciences to be offered form time to time by professors and staff members. The Staff

290A. Topics in Chemical Oceanography. *
A weekly seminar series covering recent developments in chemical oceanography. Different topics and approaches will be stressed from year to year. May be repeated for credit. K. Bruland

290B. Topics in Biological Oceanography. *
Explores different problems of special interest in biological oceanography. Different topics and approaches will be stressed from year to year. May be repeated for credit. M. Silver

290C. Topics in Marine Geochemistry. W
Selected topics in geochemistry. Discussion of theoretical models, different approaches, and recent research. Topics vary from year to year. May be repeated for credit. M. Delaney

290D. Topics in Marine Microbiology. W
A weekly seminar series covering topics in environmental microbiology. Topics vary from year to year, and will include research in ecology, methodology, biochemistry and physiology of bacteria. Emphasis on the role of bacteria in biogeochemical cycling from microzone to global scales, with particular focus in marine systems. May be repeated for credit. J. Zehr

290E. Topics in Climatic and Oceanic Change. S
Weekly seminar series covering recent developments in climatic and oceanic change. Different topics and approaches stressed from year to year. Prerequisite(s): interview with instructor prior to first class meeting. May be repeated for credit. A. Ravelo

290H. Topics in Ocean Optics. *
Examines recent developments and application of bio-optics to the marine environment, including theory, instrumentation, and remote sensing. Different topics and approaches emphasized from year to year. Prerequisite(s): previous course in marine sciences recommended. Enrollment restricted to graduate students; senior undergraduates with permission of instructor. May be repeated for credit. R. Kudela

290J. Topics in Marine Organic Geochemistry. *
Examines recent developments in uses of organic geochemistry to trace oceanographic and biogeochemical processes. Focuses on introduction to organic biomarkers, current literature, and evolving applications. Different topics and approaches emphasized from year to year. Prerequisite(s): previous course in marine (ocean) sciences and organic chemistry are recommended. Enrollment restricted to graduate students; seniors with instructor’s permission. May be repeated for credit. M. McCarthy

292. Seminar (no credit). F,W,S
Weekly seminar on various topics attended by faculty, graduate, and upper-division undergraduate students. The Staff

293. Graduate Research Seminar (2 credits). S
Weekly seminar series covering a spectrum of topics in oceanography. Designed for Ph.D. program graduate students in ocean sciences and those in biology, Earth sciences, chemistry, and physics with research interests in oceanography. Enrollment restricted to graduate students. May be repeated for credit. The Staff

294L. Ocean Ecology Laboratory. S
Provides hands-on introduction to laboratory and field applications of ocean ecology. Designed to augment lecture material from courses 218, 230, and 242; but this class is self-contained. Includes independent projects and field trips. Prerequisite(s): courses 218, 230, 242 or equivalent recommended. Enrollment restricted to graduate students or permission of instructor. May be repeated for credit. The Staff

296. Teaching in Ocean Sciences (2 credits). F
For new and/or relatively inexperienced graduate students in pedagogy of ocean sciences. Role and responsibilities of teaching in ocean sciences described and developed. Includes discussions about effective teaching methods; hands-on issues for work in the laboratory; university expectations; and regulations regarding teaching, organizational strategies, time management, and working with instructors and staff. Prerequisite(s): graduate standing or permission of instructor. Enrollment restricted to graduate students. The Staff

297. Independent Study.
Independent reading, research, and written reports not related to thesis research. Students submit petition to sponsoring agency. The Staff

297C. Independent Study (15 credits). S
Independent reading, research, and written reports not related to thesis research. Students submit petition to sponsoring agency. The Staff

299. Thesis Research.
Students submit petition to sponsoring agency. The Staff

*Not offered in 2004-05